The Cañaris, a strong and proud people, didn’t want to submit to the Incas, as many other civilisations had done when the empire was being expanded into what is now Chile/Argentina and Ecuador/Colombia.
When the Inca armies finally did bring the Cañaris and other peoples from what is now Ecuador under their control they incorporated their cities and religious centres into their own. This is what happened to the formally Cañari ruins at Ingapirca, the heart of Cañari territory.